rs47915589 SNP Detail

Summary

• ID
  rs47915589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:59653298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACACAACA AGAAAATGGA ACACTGAGAC TTGCATCCCT
  ATCTTGTAAA TGGGAAACAA TTCTACAAAA GGAAACAACA AGAACAAAAT ACACAACCCA
  R
  TTAGAAGGGA CGACTGCAAG AAAAATCCTT AAGGTGAGGT CTGGCCATTC TACACAGGTT
  CTCTTCTCAA CAACTCCCCC CTCCACCAAT ATTGGTACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61014591	NES16116689	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	A	A	G	A	A
ss144685561	ENSMUSSNP1353094	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47915589					SNP	G	A	G	G	G	G	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61014591	NES16116689	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:59653298 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19176	CpG island 19176	758 bp proximal
Del(7Ube3a-Snrpn)1Alb	Deletion, Chr 7, Beaudet 1	within coordinates
Gm38393	predicted gene, 38393	Intron
Gm72353	predicted gene, 72353	114 bp upstream
Rr346	regulatory region 346	1490 bp proximal
Rr647544	regulatory region 647544	within coordinates
Rr647545	regulatory region 647545	125 bp proximal
Rr647546	regulatory region 647546	1489 bp proximal
Snrpn	small nuclear ribonucleoprotein N	Intron
Snurf	SNRPN upstream reading frame	Intron
Tssr2280	transcription start site region 2280	1623 bp downstream
Tssr66968	transcription start site region 66968	139 bp upstream
Tssr66969	transcription start site region 66969	871 bp upstream
Tssr72702	transcription start site region 72702	555 bp upstream
Tssr72703	transcription start site region 72703	460 bp upstream
Tssr72704	transcription start site region 72704	394 bp upstream
Tssr72705	transcription start site region 72705	364 bp upstream
Tssr72706	transcription start site region 72706	416 bp downstream
Tssr72707	transcription start site region 72707	1529 bp downstream
Tssr72708	transcription start site region 72708	1551 bp downstream
Tssr72709	transcription start site region 72709	1602 bp downstream