rs47919289 SNP Detail

Summary

• ID
  rs47919289
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:110366236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAACAACA GCCAGAGTCC
  TGGAGAGATG GCTCAGCAGT CAAGAGTACT TGTTCTTGCA GAAGATCCAA GTTCCATTCC
  CAGAATCTAC TCGGTGACGT ATAACACTCA TAACTCCAGT TCTAGGGGAG ACAATGCCCT
  CTTTTGACTT CCTCATGCAC CAAATACACA GGTATGCACA GACATATATG GGAACAAAAG
  R
  TTCATGCACA TAAATAAATC TAAAAAAAAT TAAGGTTCAG CAAACTAGCT AGCTTTTTGT
  TTCTGTTTCT GTTTGTTTGT TTTTCTGTTA GACAGGGTTT CTTTGTATAA CAGAGCCCTG
  GCTGTCCTGG ACTTGCTTTG TAGACCAGGC CGGTCTCAAA CTCAAAGATA GCTGTATGCT
  GCTTGAGTGC TGGGATCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145647284	ENSMUSSNP1981523	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss322398759	CHEV_7_117910543	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47919289					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110366236 () rs orientation: forward

Symbol	Name	Function Class
Ampd3	adenosine monophosphate deaminase 3	1177 bp upstream
B430319F04Rik	RIKEN cDNA B430319F04 gene	Noncoding-Transcript-Variant
Cpgi19579	CpG island 19579	1054 bp proximal
Rr653308	regulatory region 653308	764 bp proximal
Rr653309	regulatory region 653309	1392 bp proximal
Rr653310	regulatory region 653310	1893 bp proximal
Tssr68503	transcription start site region 68503	1034 bp upstream
Tssr68504	transcription start site region 68504	1077 bp upstream
Tssr68505	transcription start site region 68505	1109 bp upstream
Tssr68506	transcription start site region 68506	1140 bp upstream
Tssr68507	transcription start site region 68507	1586 bp upstream
Tssr68508	transcription start site region 68508	1801 bp upstream