rs47922513 SNP Detail

Summary

• ID
  rs47922513
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149149504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAGA GCTAGCCCTC
  TGTACAGTAG CAACACTTGT GCCGATGGGC TTCTTTATGC TAGCAATGAC AGAGTTCCAT
  GCCCTGCACT ACTGGACTCA AAATTCAGAG TGCAATCTTT TCAGCACAGC ATTCAGTACC
  AAAAGGAAAA AGGAAACACA CAGTTCTGAC ACTGAGATAT TTTATGTGGA TAATAAATCC
  M
  CCCCCCCAAA CTCTACTAAC TACAAGTATC TACCTAGAAG ATAGAGTCTG AAATTTATGA
  CATCAGAATG ATTGGGTATA CCAGAAAACA TTTTTTCCCC TTCTTTTCAG GACTGTCAAC
  TTTGTTTACT GTTTATGTTC AATTCTATCT CCTACAAGGG ATTAAATATC CTTGTCAGAG
  CCATATGTCA AAATGCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321018996	CHEV_3_149106831	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47922513					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149149504 () rs orientation: forward

Symbol	Name	Function Class
A630039O03Rik	RIKEN cDNA A630039O03 gene	within coordinates
Gm30382	predicted gene, 30382	within coordinates
Rr398127	regulatory region 398127	1656 bp upstream
Rr587324	regulatory region 587324	916 bp proximal
Rr587325	regulatory region 587325	1315 bp proximal
Tssr36100	transcription start site region 36100	1319 bp downstream
Tssr36101	transcription start site region 36101	1386 bp downstream
Tssr36102	transcription start site region 36102	1400 bp downstream
Tssr36103	transcription start site region 36103	1484 bp downstream
Tssr36104	transcription start site region 36104	1509 bp downstream
Tssr36105	transcription start site region 36105	1586 bp downstream