rs47922775 SNP Detail

Summary

• ID
  rs47922775
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151350494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGGGGT GAAGAGAGTC
  TCTCTTCTTT GTCTGTGTTA AAATAAATAC AGCAATAAAG TGCAGGAGAC CCCAGCATAC
  CCTGGACAGT GAGGCATCTT GGTCCTGAAA GGGAAAGCCT GGGGAGAAGA AAATGAAGAA
  CAGGCCAAAT CCCCCTTACA ATGACACCTT TAGAATGTAG ACAGGACAGC CACCAAGGCT
  K
  ACTCTTAGCT CCCACACAGG AGGGAACACC TCTCATGGGA GTATGTACTA GGAACTTTTA
  TGTGAATATA AACCACTGGC ATAGGGGAGA AAGACAACAT TGGGTAGTCT GTGATTTGTG
  TGGAGAGAGA TAAGGATGCA GATAGGGGTG TTACACTGGG GCAGGGGGAA GGGGGGTTCA
  GAGTCAGGAG TAGAGATGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60861251	NES15995693	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	G	G	G	G	G	G	G	G
ss144728487	ENSMUSSNP3574016	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47922775					SNP	G	T	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861251	NES15995693	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151350494 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	within coordinates
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	within coordinates
Rr117371	regulatory region 117371	within coordinates
Tssr54686	transcription start site region 54686	1121 bp downstream
Tssr54687	transcription start site region 54687	1143 bp downstream