rs47923334 SNP Detail

Summary

• ID
  rs47923334
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55909527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACGCTCAGG AGTGCCCTCG TGTTCTGTGT CAGTGGGGTT
  GTAAAGAGAA AGGCAAGTCG GCTAGGAACA GCCAGACGGC GCCCTGAGAC CCCGCGCGTG
  R
  CCACCGAACT GGTGTTAGCG GCGAGCTGGA ACGGAACAAA CTACTTGTCC CATCATGCCT
  GGAGGCAGCT CTGTCCTTTG CATCCTAGGA GTTGTAGTTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62405523	NES17238144	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47923334					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62405523	NES17238144	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55909527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	within coordinates
Gmpr2	guanosine monophosphate reductase 2	within coordinates
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	190 bp upstream
Rr492562	regulatory region 492562	within coordinates
Rr492563	regulatory region 492563	15 bp distal
Rr492564	regulatory region 492564	44 bp proximal
Tssr125802	transcription start site region 125802	918 bp downstream
Tssr125803	transcription start site region 125803	180 bp upstream
Tssr125804	transcription start site region 125804	238 bp upstream
Tssr125805	transcription start site region 125805	301 bp upstream
Tssr128855	transcription start site region 128855	201 bp upstream
Tssr128856	transcription start site region 128856	152 bp upstream
Tssr128857	transcription start site region 128857	within coordinates
Tssr128858	transcription start site region 128858	66 bp downstream
Tssr128859	transcription start site region 128859	99 bp downstream
Tssr128860	transcription start site region 128860	123 bp downstream