rs47924449 SNP Detail

Summary

• ID
  rs47924449
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:38107243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCAGAAGA CACAAATCTT GTCCTGGTAT AGAGGGCACC
  TCATTCTCGT CGTCAGCTTC TTGATAACTG ATAGCACAAT GCTTTTCTAA AGGACCCCTG
  M
  AGCTGTACTA CTGTCTTCAC TACTACACCC TCCAATAACA TGTGTCTCTG TCTAATGTCT
  ATCGCCCTCA ACTTATGCCA CCAACAACTT GAGGTCACG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146361617	ENSMUSSNP2527575	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss325801298	CHEV_19_38193285	CHEVERUD	SCREENING_POP	f	SNP			A		A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs47924449					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38107243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10802	CpG island 10802	429 bp proximal
Rbp4	retinol binding protein 4, plasma	Intron
Rr547239	regulatory region 547239	1118 bp proximal
Tssr156245	transcription start site region 156245	461 bp downstream
Tssr159111	transcription start site region 159111	1994 bp upstream
Tssr159112	transcription start site region 159112	1944 bp upstream
Tssr159113	transcription start site region 159113	1879 bp upstream
Tssr159114	transcription start site region 159114	476 bp upstream
Tssr159115	transcription start site region 159115	420 bp upstream
Tssr159116	transcription start site region 159116	318 bp upstream
Tssr159117	transcription start site region 159117	304 bp upstream