rs47925212 SNP Detail

Summary

• ID
  rs47925212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40585702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTAAAG TGCTTAAATT
  CCCACCCACA GGGGCATCTG GCTTCTCTTC TCAACTCAGT CCGCAACACA GCCCCAGGGC
  AGGCGCATCT GTCCCGCAAG CACCTCCTCC TCTTCAGGCT CCTTGGTGGC CTCAGGTGAC
  AGTGTCCTTC CCTGGGGCGG CGCCTGGACA CCGGTGTCCA AAGCTGGGGC CGCCTAAGGT
  M
  GGCAAACTCT GGGTGAGGCG CGGAGCGCGC ACTAGGCGGC GAGAGAGTGC CCCTGGAGCG
  TGGTTCCCAG AGCGGTCTCG GGGACGTCCA GCACAGAGAG GAGCCGCGGG TCACCCTGGC
  CCTTGGGGAC CTGGGCTGCG CTCCCAGAGC GTCCACCTGC CAGGACTGAG CGATCGCTCC
  CGCGGGCGAT CCCAGGGCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60393097	NES15896407	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47925212					SNP	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60393097	NES15896407	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40585702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13107	CpG island 13107	within coordinates
Intu	inturned planar cell polarity protein	within coordinates
Rr67318	regulatory region 67318	1702 bp distal
Rr77556	regulatory region 77556	within coordinates
Tssr28946	transcription start site region 28946	524 bp downstream
Tssr28947	transcription start site region 28947	397 bp downstream
Tssr28948	transcription start site region 28948	121 bp downstream
Tssr28949	transcription start site region 28949	83 bp downstream
Tssr28950	transcription start site region 28950	within coordinates
Tssr28951	transcription start site region 28951	25 bp upstream
Tssr28952	transcription start site region 28952	55 bp upstream
Tssr28953	transcription start site region 28953	87 bp upstream
Tssr28954	transcription start site region 28954	129 bp upstream