rs47925502 SNP Detail

Summary

• ID
  rs47925502
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24849686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAACTC TCAGCTCCTC
  CTGCACCATG CTTGTCTGGA TGTTGCCATG TTCCTGCCTT GATGACAACA GACTGAACCT
  CTGAACTTGT AAGCCAGCCC TAATTAAATG TTATCCTTAT AAGAGTTGTC TTGGGGGCTG
  GTGAGATGGC TCAGTGGGTA AGAGCACCCG ACAGCTCTTC CAAAGGTCCA GAGTTCAAAT
  T
  CCAGCAACCA CATGGTGGCT CACAACCATC CGTAATGAGA TCTGACTCCC TCTTCTGGAG
  TGTCTGAAGA CAGCTACAGT GTACTTACAT ATAATGAATA AATAAATCTT AAAAAAAAAA
  AAAAGAGTTG TCTTGGTCAT GATGTCTGTT CACAGCAGTA AAACCCTTAC TAACACAGTA
  ATCTAGGTGG AGACTGCATC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148098456	ENSMUSSNP1131973	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J
rs47925502					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24849686 () rs orientation: forward

Symbol	Name	Function Class
Tssr45438	transcription start site region 45438	759 bp upstream
Tssr45439	transcription start site region 45439	777 bp upstream
Tssr45440	transcription start site region 45440	794 bp upstream
Tssr45441	transcription start site region 45441	806 bp upstream
Tssr45442	transcription start site region 45442	813 bp upstream