rs47925973 SNP Detail

Summary

• ID
  rs47925973
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34099289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTGTCA CTACCTCTGT
  TTCCTTTCCT TTTTCTTTTT CTTTTTCTTT TCTTTAATTA GAGGAACTAC TGTGTGTGAT
  CAGAAAATGT GTGGTACAGA ATTGTTTATA CATTCATTAT GGGGTGGGGG TGGGCCTGCT
  GGAGAGGGCT CCTTTTCCAG AGGACTCAAG TTCAGTTCTC AGCACCCACT AAGGGGTTCT
  C
  GTCATCTATA ACTTCTGTTA CAGGGATTTG ATGCCTTCTG ACCTCTCCAG ACACATGGCC
  AATAGACACA GGGCCAATAG ACATACATGT AAGACAAAAC ATTCACACAA TAAAAGTGAA
  TAAAGACTTA AAAACAAATT CATTTATATA CACAAAACAC ACATCACAAA AACTCATTAG
  TCCAGTGAGA TTCAGATGGT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147537727	ENSMUSSNP306375	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47925973					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34099289 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	within coordinates
Rr500667	regulatory region 500667	1924 bp distal
Tssr131017	transcription start site region 131017	365 bp upstream
Tssr133963	transcription start site region 133963	373 bp downstream