rs47927473 SNP Detail

Summary

• ID
  rs47927473
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:62141348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAACTGC CGTTCTTTTG
  ACTTCTGTTA AAATGCTTCC TTGCCTTACT TCCCCTCCAA CAACAACCAA GATGTAGTTT
  TTCTGTGTTC TTTGCCTTTA CAAGCTCTGT GTATGGGCTG GAGAGATAGC TCAGCTATTG
  AAGGCTAGGC TCGCAACTAA AAATATAAAA TCTCCATGAA AATGCATTAA AGGCTGCTCT
  S
  TGAGAAGTAT TTCTCACCAG GCAGTCTCTG TTAGGCTTAA TACAAACTCT CAGTCCATAC
  TTTGCTCATG CTGGATGTTC TTTGTGTATC TATCCTGCAA CACTTTGAAT TCATGCCTTT
  CCCACTCAGT TCCCAAGTAG AAACTTACAG CACTGCTTTA GAGTTATGAA ATCACCTGCC
  TTTTTCCATC CATGTTGCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60476148	NES16455394	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47927473					SNP	C	C	C	C	G	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60476148	NES16455394	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:62141348 () rs orientation: forward

Symbol	Name	Function Class
Rr318921	regulatory region 318921	1853 bp proximal