rs47927627 SNP Detail

Summary

• ID
  rs47927627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59203414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACCC CCCCCCAGCC
  CTCAAGACTC TTAAGTCCTT TCTATGTGTT TCTTTCTTTA AACATCGGCT GGCATCTTTG
  AAGTATGAGC CTGTACATTC TGTGTATGCC AGTAGAGAAT GAAAGCCTGG GAAAAACAAA
  ATGAGAGGGT AGCAAACTGA TAGCCTTCCC TTCCTGGCCT TCTATTCCCT GCCTGAGAAG
  R
  CAGTACAACG TCCATCCCAA GAATGAGTTT AGAGCGGACG TTATCGGAAA TGTTTGCTCC
  CACAACCCAC TAGTTCTGCC ACCATTTTCT ATTTCCTTTG GTTCAGGGAT CTCAGATCCC
  AGTGAGTGAC ATCTTTTGTG TAATGGTCAT ACATAGTCCT CCCTGGCCTC TTCTCATGTC
  CCAGGCTGCT GCCTGGGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52642408	NES15460208	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47927627					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52642408	NES15460208	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59203414 () rs orientation: forward

Symbol	Name	Function Class
4930415C11Rik	RIKEN cDNA 4930415C11 gene	within coordinates
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates