rs47928438 SNP Detail

Summary

• ID
  rs47928438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110950212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACAATAA
  TACCCGCTCC CTGAGAGAAA CAGCAGGTAA GCTATTGTGG TGTCACGTGA CCAGTATTCG
  ACCAGCTGAG GTAGCTGGAT TGCTATGAGT TCAAGGCCAT CCTGAGCCCC TGGTGAGGAG
  AGAGACAAGA TGGTAGACTG ATAGATTTGA AAGCTCCAGC TGTTCTAGAC CTTGTTCCCT
  R
  TCTCATGGCT TTTTGGTGGC AGGTGGCTTT CTTTATCATG GCACCAAACA GTCCTACCCT
  CAGCAGCTTA CCCTGTCCCC AAGGTCACGG TCGTGGCTTG AGCATGTCCC TTGAGGTTTA
  CGTGTTGGAA ACCAAGTCCC CAGTGAGACT GTGTTGACAG GCGGGAAGAT CCGGAGACGC
  CTGACCTCGG CAATGCGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61718135	NES17662564	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47928438					SNP	A	A	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61718135	NES17662564	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110950212 () rs orientation: forward

Symbol	Name	Function Class
Gm48630	predicted gene, 48630	1596 bp downstream
Gm51959	predicted gene, 51959	within coordinates
Gm60603	predicted gene, 60603	1596 bp downstream
Rr473047	regulatory region 473047	1707 bp distal
Rr473048	regulatory region 473048	within coordinates
Rr473049	regulatory region 473049	779 bp proximal
Tssr3954	transcription start site region 3954	1627 bp upstream