rs47928497 SNP Detail

Summary

• ID
  rs47928497
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAA ACAATAAAAA TCCCTTTGTG
  K
  AGCCAATTTA CATTCCCGAG TTCCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146998805	ENSMUSSNP695313	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323275253	CHEV_10_24634436	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47928497					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790528 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	577 bp downstream
Med23	mediator complex subunit 23	1170 bp downstream
Tssr92746	transcription start site region 92746	990 bp upstream
Tssr92747	transcription start site region 92747	1063 bp upstream
Tssr97085	transcription start site region 97085	862 bp downstream
Tssr97086	transcription start site region 97086	908 bp downstream
Tssr97087	transcription start site region 97087	942 bp downstream
Tssr97088	transcription start site region 97088	1000 bp downstream
Tssr97089	transcription start site region 97089	1019 bp downstream
Tssr97090	transcription start site region 97090	1050 bp downstream
Tssr97091	transcription start site region 97091	1441 bp downstream
Tssr97092	transcription start site region 97092	1461 bp downstream
Tssr97093	transcription start site region 97093	1485 bp downstream
Tssr97094	transcription start site region 97094	1501 bp downstream
Tssr97095	transcription start site region 97095	1515 bp downstream
Tssr97096	transcription start site region 97096	1780 bp downstream