rs47928958 SNP Detail

Summary

• ID
  rs47928958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTGCCA TGGTGGACTC
  TCATCCCTCT GGGACCATAA ACCCAAATAA TAATTTTTAT TTTTATTTAT TATTATTATT
  ATTATTATTA TTATTATTAT TATTATTATT ATTTTCGAGA CAGGGTTTCT CTATATAGCC
  CTGGCTGTCC TGGAACTTAT TTTGTAGACC AGGCTGACCT CGAACTTAGA AATCCGCCTG
  Y
  CTCTGCCTCC CGAGTGCTGG GATTAAAGGC ATGCGTCACC ACTCCTGGCC AAATAATAAA
  TTTATAAGTT TATTTATTAA TGAATATTAT TATGCATAGA TTTATCACAG CCATGGAGAA
  GTAGCTTAAA ACACCCACAT CTCGGAGTTT TAGCTGTGCA GTGGCGGGCT GTGTGCTGTG
  GTGGGCCGTG TGCAGTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148084630	ENSMUSSNP6112291	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321435533	CHEV_4_152022514	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47928958					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	1169 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	262 bp distal
Rr93365	regulatory region 93365	862 bp distal
Rr97434	regulatory region 97434	213 bp distal