rs47930252 SNP Detail

Summary

• ID
  rs47930252
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTGTGG CTTGAATGAC
  TCTCAAAGTT ACTTCTATAC ATACCTCTAT GTCCATTATC GAATCAGCTC TTCTGACAAT
  TGGAAAGAAC TCCTATTCTA AAAGGCAATG GATTCCTTAG ATCCTTTCAC CTTATTGTAT
  CCTTGTAGGG AAATGCAAAA TTTTAGAAAC GATTCTAATA AACGAATCTT CCTAAGTAAA
  Y
  CCTTTTCAAT TTCTTTTAAT ATTCGAGATT TGAACTTATG TGTTGGATTT GTTAGTTGCT
  ATTTGTCTAT GTAACCGCCT TGTGTCCATT TGTCTATTTA ATTACCCTGT GTCCAGCTAT
  GAGGAAAAAA AAGTGAAAAT TAACCAGAAG CCTCCCCTGG GTTAAACTCC TGGGGTTCTT
  CCAGAAATCT GAGAAATTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014990	ENSMUSSNP1453491	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47930252					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	207 bp proximal
Met	met proto-oncogene	692 bp upstream
Rr626799	regulatory region 626799	202 bp proximal
Rr626800	regulatory region 626800	366 bp proximal
Rr626801	regulatory region 626801	409 bp proximal
Rr626802	regulatory region 626802	941 bp proximal
Tssr55050	transcription start site region 55050	324 bp upstream
Tssr55051	transcription start site region 55051	447 bp upstream
Tssr55052	transcription start site region 55052	641 bp upstream
Tssr55053	transcription start site region 55053	718 bp upstream
Tssr55054	transcription start site region 55054	777 bp upstream
Tssr55055	transcription start site region 55055	793 bp upstream
Tssr55056	transcription start site region 55056	819 bp upstream
Tssr55057	transcription start site region 55057	984 bp upstream
Tssr55058	transcription start site region 55058	1024 bp upstream
Tssr55059	transcription start site region 55059	1063 bp upstream