rs47933222 SNP Detail

Summary

• ID
  rs47933222
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128533296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG TACCCATATT TAATGTCTAG
  Y
  AACCACTTAT AACTACAGCT CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145462696	ENSMUSSNP6994983	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319965287	CHEV_1_130502136	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47933222					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128533296 () rs orientation: forward

Symbol	Name	Function Class
Rr366987	regulatory region 366987	317 bp upstream
Rr396265	regulatory region 396265	454 bp upstream
Rr417790	regulatory region 417790	230 bp proximal