rs47933396 SNP Detail

Summary

• ID
  rs47933396
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65050566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTCTGTG TGTTTGTGTT
  GTATCTAAGT TAGCTACAAA GATCTCTGAT GCATTCTAAG ATTTTTTTTT TTTTTTTTAC
  TCAGATCTCT TGAGTACAAG TAAAATGTAA AAATATACAA AGTCCAATCT TTTGGGTAAA
  ATGACTGAAT ATCATTCATA AAGTCTACAA ATACCATGAC TGGAAAAATT TGGCAGGTAG
  K
  AGGGATACAA GGGAGCCTGT TTTGAAAAAT ACCAAGTTCC AGGTGTCCCT TACATAGAAG
  CAAGGCTGTG GAGTATTATC TGGGAAAGCT GTGCTATGGA TACTGACTTA GGGTTTCTCA
  GTCCATAGAT GGTGCTTAAA CCCATGAATA CATCTGCGGT CATCAGGAGA GATAGTAAAT
  TTAAAAGCTA ACCCAAGATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60744927	NES16383414	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47933396					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744927	NES16383414	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65050566 () rs orientation: forward

Symbol	Name	Function Class
Akr1cl	aldo-keto reductase family 1, member C-like	1671 bp downstream
Rr412365	regulatory region 412365	772 bp distal
Rr412366	regulatory region 412366	1072 bp distal
Rr412367	regulatory region 412367	1018 bp distal