rs47935025 SNP Detail

Summary

• ID
  rs47935025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74859170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCA CACATACATG AAAAATAAAA
  Y
  CTTTACATTA TCATCATCAT CATCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136638880	ENSMUSSNP878235	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss323007471	CHEV_9_74799695	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47935025					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74859170 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	992 bp upstream
Cpgi22037	CpG island 22037	596 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	916 bp distal
Gm68252	predicted gene, 68252	within coordinates
Rr401515	regulatory region 401515	within coordinates
Rr401516	regulatory region 401516	841 bp upstream
Rr683033	regulatory region 683033	66 bp distal
Rr683034	regulatory region 683034	152 bp distal
Rr683035	regulatory region 683035	197 bp proximal
Rr683036	regulatory region 683036	919 bp proximal
Rr683037	regulatory region 683037	1210 bp proximal
Tssr86114	transcription start site region 86114	964 bp upstream
Tssr86115	transcription start site region 86115	1186 bp upstream
Tssr86116	transcription start site region 86116	1268 bp upstream
Tssr86117	transcription start site region 86117	1673 bp upstream