rs47935515 SNP Detail

Summary

• ID
  rs47935515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54414961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGCCAGT CAAAGCACCC
  AGAATAAAGA GGTCTACACT TTCTCCTGCA CTATCACTGA CTGTTTCCTC TTGTGAAACG
  ACCCTCAAGA GACACAGCCT CTTCTCCCGG TAGCAACCAT GATGGTTTTA TCCTTGAAAA
  AAAAGATTTC ATGATTGTTA ATAATCAGAC ATTTTCAGAA AAAGACATCA TTCGAGAAGA
  R
  ACTCTAGCTA ACTGCCAATA CTGTTTGGAC TTTAAAATGA AGTATATCTA TAAAATGATG
  TCAACAGTTT ATTTCGTGGC TCATAAACTG ACTCTCAGAG AGAATCCTAA GAAGAATATT
  TTTCAGAGTT CAAGCAAGCG CTTAAGTGTT TGAGTCTTAG GACATTGACT AAATCATCCT
  CTTGATGAAC ACATGGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62393383	NES17236670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47935515					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393383	NES17236670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54414961 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	765 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	417 bp upstream
Traj41	T cell receptor alpha joining 41	1179 bp downstream
Traj42	T cell receptor alpha joining 42	1668 bp downstream
Tssr125566	transcription start site region 125566	1522 bp downstream
Tssr125567	transcription start site region 125567	1285 bp downstream
Tssr125568	transcription start site region 125568	1268 bp downstream
Tssr125569	transcription start site region 125569	1248 bp downstream
Tssr125570	transcription start site region 125570	1219 bp downstream
Tssr128543	transcription start site region 128543	842 bp upstream