rs47935542 SNP Detail

Summary

• ID
  rs47935542
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81013850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGTCACTC GGGTGTGTTT GCTGCCAGTG GACAAATAGT
  GGCGTGTTTA GGGTCCTCTC TGTGACATGC TTGTGTGTGC TGCCTAGCCT GCCTTGGTCA
  S
  ATGCTGAATG GACTGTTGAC CTCTTCCTCT CCGTAGCGCC ATCTCCCTCT TCTACGAGCT
  CTCTGAGAAC GACCTGAACT TCATTAAGCA GAGCAAGGAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388496	NES15267090	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47935542					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388496	NES15267090	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81013850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	within coordinates
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	947 bp upstream
Rr402079	regulatory region 402079	1336 bp downstream
Rr435542	regulatory region 435542	1375 bp distal
Rr435543	regulatory region 435543	958 bp distal
Rr435544	regulatory region 435544	457 bp distal
Rr435545	regulatory region 435545	1659 bp proximal
Snord37	small nucleolar RNA, C/D box 37	945 bp upstream
Tssr94695	transcription start site region 94695	1368 bp downstream
Tssr94696	transcription start site region 94696	279 bp downstream
Tssr94697	transcription start site region 94697	179 bp downstream
Tssr94698	transcription start site region 94698	33 bp upstream
Tssr94699	transcription start site region 94699	1134 bp upstream
Tssr94700	transcription start site region 94700	1318 bp upstream
Tssr94701	transcription start site region 94701	1378 bp upstream
Tssr94702	transcription start site region 94702	1555 bp upstream
Tssr94703	transcription start site region 94703	1618 bp upstream
Tssr94704	transcription start site region 94704	1637 bp upstream
Tssr94705	transcription start site region 94705	1665 bp upstream
Tssr94706	transcription start site region 94706	1857 bp upstream
Tssr94707	transcription start site region 94707	1907 bp upstream
Tssr94708	transcription start site region 94708	1972 bp upstream
Tssr98570	transcription start site region 98570	1362 bp downstream
Tssr98571	transcription start site region 98571	1730 bp downstream