rs47935577 SNP Detail

Summary

• ID
  rs47935577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:10958764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGCAGT GACTTACAGT
  GACTTCAGCA TAGTCTGTTG GCATATGGAT CTGCTTCCCG TTTTCTTTGC TACAGTGACT
  GGCTGTCTCA TCACTTTTTT CAGTTTTTTG GTTCTTCAGC CAGAGTTCAT AAAATTGCTC
  TATATCATGT ACTGAAGAAA AAGGAACCGT GTTCAGCAAA CTACGAAATG CCATTCAAAT
  Y
  CACATAAGCA CATGGACTGC CTGCCTGTTG CTACACCTTC AAAACAAATG TGGTGCACAT
  CTTTACTCCA AGTACTCCGG GGGGTGGGGG GGGACCGAGG CAGGTGGATC TCTGAATTTT
  CGGTCAGCCT GGTCTACAGG TTGAGTTCCA GGACAGCAAG AGCTACATAG AGAAACCCTG
  TCTTGAAAAA CAAAACAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	DBA/2J	PWD/PhJ
ss52594003	NES15689315	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	DBA/2J	PWD/PhJ
rs47935577					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52594003	NES15689315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:10958764 () rs orientation: forward

Symbol	Name	Function Class
D16Mit164	DNA segment, Chr 16, Massachusetts Institute of Technology 164	1058 bp distal
Gm61125	predicted gene, 61125	within coordinates
Rr322718	regulatory region 322718	1744 bp proximal
Zc3h7a	zinc finger CCCH type containing 7 A	within coordinates