rs47936792 SNP Detail

Summary

• ID
  rs47936792
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:81113791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACATATGC TAAAGTCAAA
  ATAATCTATC ATCTATCTGT CTGTCTGTCT GTCTGTCTGT CTGTCTATCT ATCTATCTAT
  CTATCTATCT ATCTATCTAT CTATCTATCT AACTATCATC CATCTACCTA TATGCAAACA
  AACCCATTCA CTTGATTCTC TGGAAAGCCT TATTGCAGGC TCTTAAAAAT ATGCAGTAAA
  M
  ACAAATTTCC ACAGATCCAT TTTATCCCTC TTGCCCCTAA GGCTGAGACC ATCACAAAGT
  GAGTGGGGAG AATGTAAAAG CCAGAAATTG AGGCACGCGG GAAAGAAGCA GTGTCTTCCG
  GAATGGCAGG ATTGCTACAC TCATGATGCC AGCTTTGTTA CCTGAACCCA ATCAAGACAG
  TCAACATTCC AGCATGAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62937163	NES17409716	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47936792					SNP	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62937163	NES17409716	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:81113791 () rs orientation: forward

Symbol	Name	Function Class
Gm33596	predicted gene, 33596	869 bp downstream
Rr393005	regulatory region 393005	1052 bp downstream
Rr393006	regulatory region 393006	1214 bp upstream
Rr531544	regulatory region 531544	1722 bp proximal