rs47938558 SNP Detail

Summary

• ID
  rs47938558
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29579680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGG ATATCCAGGA AGCTGCTCAT
  T
  CCAGGATCCG GCTCCAGAAA CGTCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145431533	ENSMUSSNP6863957	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47938558					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29579680 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	198 bp upstream
Rr405148	regulatory region 405148	24 bp upstream
Rr524885	regulatory region 524885	19 bp proximal
Rr524886	regulatory region 524886	416 bp proximal
Rr524887	regulatory region 524887	914 bp proximal
Tssr143531	transcription start site region 143531	203 bp upstream
Tssr143532	transcription start site region 143532	217 bp upstream
Tssr143533	transcription start site region 143533	250 bp upstream
Tssr143534	transcription start site region 143534	263 bp upstream