rs47938807 SNP Detail

Summary

• ID
  rs47938807
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8821258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAATTCA GGGCAGATGT
  GGGACACTCA TGTAGCCCTT GAGCTTATGA ACTTTAAAAC AAATGGCCCG GAGGATGATA
  AGTCTAGAGG CGGCATCTGC TTCCTGAGGC CTCGCGGGGG CTCCTTCCAA ACACTTAATG
  TATGACACTG TGACAGGAAA GCAAGCCTGG CTTATTAGGT TCTCAGCCTG TAAAGCGAAG
  K
  CTGCAAACAT GCCTTAGACA CAAGCTTGCA CGTATATTTC AGAGCGCTTA ACCAGACTTT
  CAGATGCATC GGGAGCGAAC ATCAGGGATC GAAACGCCCC TCCCTCCTGG GCCTCCAGGA
  CTCTTTATAC CGTTTGGCTC ACTTGTGTTT AGTTTTTCCA AAAACTGAAA TTGAATTGTT
  CTGGCTGTCT TTTCCTGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52141443	NES15242051	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	T	T	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47938807					SNP	T	T	T	G	T	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52141443	NES15242051	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8821258 () rs orientation: forward

Symbol	Name	Function Class
Gm48727	predicted gene, 48727	327 bp downstream
Gm67475	predicted gene, 67475	within coordinates
Rr427431	regulatory region 427431	within coordinates
Rr427432	regulatory region 427432	341 bp proximal
Tssr96665	transcription start site region 96665	245 bp upstream
Tssr96666	transcription start site region 96666	220 bp upstream