rs47939248 SNP Detail

Summary

• ID
  rs47939248
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45235333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGGAAG AAGGAAACAG
  TGAAGACAGC ACAAGAATGA GATCACATGA CTAGACCAAG TGACTGCCTC AAACTGGCGT
  CTTGGGCACA TCCAGAGCCC TCTGGTCCTG GGCCATCTCA TGCTGAAAGA AAGCTTGGCT
  TAGTGGGGTC TCAAGATTCT CTTGTCTGAG GGTATCCCCA GAGTGATGGC TTTAAAAGGG
  R
  GTAGCTCTAG GAGGGAGCTT CTGCAGCCTG TCTTAGGCAA GGACAGTGGT CACTGCAGTG
  GCCACCGGAC AGTTTCTGAG TCCAGCAGAT AAGCTTGTGT AGGGCTCTTC TTATGGTCTG
  CAAGGGGCAG GGGAGCTGGG GGCTCAGCCT GCAGCAACAG CTAGCTAACC ATAGGAAACC
  CAGAGAGGAC AATGCAGGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136409291	ENSMUSSNP4545028	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47939248					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45235333 () rs orientation: forward

Symbol	Name	Function Class
Lncbate3	brown adipose tissue enriched long noncoding RNA 3	1956 bp upstream
Tmprss13	transmembrane protease, serine 13	within coordinates