rs47939308 SNP Detail

Summary

• ID
  rs47939308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123261055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTAAAC TCATAAAGGG
  GCATCATGGT GAGTACTGCT GGCCTGGCAT ATGTGCTGCC TCTGTTCTTC TACCTTACAC
  CAATATTACT TTTACTGCTC TGCCAGAGTT TGTTTTCCTG AGGCATCCTT CATGTACAGT
  AAGCCACATC TTAGGTTTTA GGGCAGTCAA GCCCCTAAAT TCATAGCTGC TGCTTGATTT
  Y
  AATGAAGACA AATAGTGAAA ACCAACTGCA AACTCTAAAA GTAGGTGTAA GGGGGGGAGA
  GGGAGGGATC TCGGTGGGAA AAGGGTCAGG GAGGAGAAGA GGGGAACATG ATCAAATATT
  GGGTGGGGAA AACAGAACTG AAGCCTTGAG GGCAAGCAGA AAGAATGGAA ATAAACAACC
  TTGGAGGTAG GAGGATGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60936888	NES16189341	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47939308					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60936888	NES16189341	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123261055 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1316 bp downstream
Tssr58809	transcription start site region 58809	679 bp downstream
Tssr58810	transcription start site region 58810	654 bp downstream
Tssr58811	transcription start site region 58811	565 bp downstream
Tssr63020	transcription start site region 63020	1592 bp upstream
Tssr63021	transcription start site region 63021	1514 bp upstream
Tssr63022	transcription start site region 63022	1475 bp upstream
Tssr63023	transcription start site region 63023	1420 bp upstream
Tssr63024	transcription start site region 63024	1322 bp upstream
Tssr63025	transcription start site region 63025	1290 bp upstream
Tssr63026	transcription start site region 63026	1269 bp upstream
Tssr63027	transcription start site region 63027	1231 bp upstream
Tssr63028	transcription start site region 63028	1206 bp upstream
Tssr63029	transcription start site region 63029	1178 bp upstream
Tssr63030	transcription start site region 63030	1122 bp upstream
Tssr63031	transcription start site region 63031	1092 bp upstream
Tssr63032	transcription start site region 63032	1061 bp upstream
Tssr63033	transcription start site region 63033	1047 bp upstream
Tssr63034	transcription start site region 63034	1021 bp upstream
Tssr63035	transcription start site region 63035	1006 bp upstream
Tssr63036	transcription start site region 63036	939 bp upstream
Tssr63037	transcription start site region 63037	906 bp upstream
Tssr63038	transcription start site region 63038	881 bp upstream
Tssr63039	transcription start site region 63039	813 bp upstream
Tssr63040	transcription start site region 63040	769 bp upstream
Tssr63041	transcription start site region 63041	722 bp upstream
Tssr63042	transcription start site region 63042	702 bp upstream
Tssr63043	transcription start site region 63043	685 bp upstream
Tssr63044	transcription start site region 63044	650 bp upstream
Tssr63045	transcription start site region 63045	570 bp upstream
Tssr63046	transcription start site region 63046	557 bp upstream
Tssr63047	transcription start site region 63047	536 bp upstream
Tssr63048	transcription start site region 63048	502 bp upstream
Tssr63049	transcription start site region 63049	478 bp upstream
Tssr63050	transcription start site region 63050	433 bp upstream
Tssr63051	transcription start site region 63051	411 bp upstream
Tssr63052	transcription start site region 63052	1091 bp downstream
Tssr63053	transcription start site region 63053	1201 bp downstream
Tssr63054	transcription start site region 63054	1368 bp downstream
Tssr63055	transcription start site region 63055	1395 bp downstream
Tssr63056	transcription start site region 63056	1436 bp downstream
Tssr63057	transcription start site region 63057	1469 bp downstream