rs47939993 SNP Detail

Summary

• ID
  rs47939993
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40123204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTC TCTGGCTCAT GGACTGCAGC
  M
  CTACACACAC CATCCTCTTC CTCCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60723907	NES16366403	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A
ss148977320	ENSMUSSNP3905160	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47939993					SNP	A	A	A	A	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60723907	NES16366403	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40123204 () rs orientation: forward

Symbol	Name	Function Class
Cpgi194	CpG island 194	1717 bp proximal
Gm16894	predicted gene, 16894	within coordinates
Il1r2	interleukin 1 receptor, type II	668 bp upstream
Rr29353	regulatory region 29353	1196 bp proximal
Rr396010	regulatory region 396010	1692 bp upstream
Tssr62	transcription start site region 62	666 bp upstream
Tssr6411	transcription start site region 6411	689 bp upstream
Tssr6412	transcription start site region 6412	720 bp upstream
Tssr6413	transcription start site region 6413	731 bp upstream
Tssr6414	transcription start site region 6414	1154 bp upstream
Tssr11414	transcription start site region 11414	1779 bp downstream