rs47940372 SNP Detail

Summary

• ID
  rs47940372
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123300996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTGGTT CCTAAGCTTC
  CCTAAATAAG GCCTATCATA CTCTTGAGTG TGAGTCTCAG TACCTCAAAT CCCAGACACA
  AAAGCCTCTA AGGTCACAAG TATCCCCTCA GCACCTGTCA CAACACACCC CCTAGCTGGT
  GTTACATACT TGGCTTCTGG AGATTTGAAG TTGAATGGCA CACACTAGAA GGCTTGGAGA
  R
  CAGCAAGCAA AAGATACTTT TCATTAAGGG CAACCGTCTG TGGCTTATTA ATCACTCATG
  TTCCAAGCCA ACATTTATCT TGCACCTTTG TAACAATCAA ACCTATCTTC TTTGGAAGCC
  TAGTTAACCC AGTTATTTCC TGCGCAAATG TCTCCTGTAT CGTTAACTCT TAATTCACAC
  AACCTCCAGA AACAGGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135766552	ENSMUSSNP2759967	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320920389	CHEV_3_123210265	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47940372					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123300996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	591 bp proximal
Prss12	serine protease 12 neurotrypsin (motopsin)	750 bp downstream
Rr397991	regulatory region 397991	313 bp downstream
Rr584523	regulatory region 584523	428 bp distal
Rr584524	regulatory region 584524	293 bp distal
Rr584525	regulatory region 584525	1027 bp proximal
Rr584526	regulatory region 584526	1572 bp proximal
Rr584527	regulatory region 584527	1963 bp proximal
Snhg8	small nucleolar RNA host gene 8	205 bp downstream
Snora24	small nucleolar RNA, H/ACA box 24	590 bp downstream
Tssr31551	transcription start site region 31551	1203 bp upstream
Tssr31552	transcription start site region 31552	1241 bp upstream
Tssr35502	transcription start site region 35502	983 bp downstream
Tssr35503	transcription start site region 35503	1568 bp downstream