rs47940779 SNP Detail

Summary

• ID
  rs47940779
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135511065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCAG ACCCTCACCA CCCCACAGGC
  A
  GGGAGGTCTC AGGAAGACTG CAGCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145538527	ENSMUSSNP2609605	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319991254	CHEV_1_137479904	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47940779					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135511065 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi793	CpG island 793			1250 bp proximal
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419197	regulatory region 419197			2000 bp distal
Rr419198	regulatory region 419198			45 bp distal
Rr419199	regulatory region 419199			956 bp proximal
Tssr13868	transcription start site region 13868			1954 bp downstream
Tssr13869	transcription start site region 13869			1981 bp downstream
Tssr13870	transcription start site region 13870			1987 bp downstream