rs47942154 SNP Detail

Summary

• ID
  rs47942154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGATATA TCTCCAGCTT
  TAACAAAAGA GAGCCGAGCT CCATGGTCCG TGCCTGGAGT CCCAGCACGG TTAGACTGAG
  CCAAGAGCAT CCTTGCACAG AGGGACTAGG GGACAAGCTG GTTACCATGA GAAGACACAA
  ATGGTCCTGC AACCCAGATG GACAAATCCT CAGAAATATC ACTAATTATT GATGCTCTTG
  R
  GTCCCAAATT TGATCATCTG TAGATCTTAT TGATTTTTAC AGTTCAATCA TATCTGCATT
  TTCTCTATTC TTCTCATTCA CACCACCATC ATGGCTCAAC ATTCTAATAC ACACAGCATA
  AAACCGGGCT GCATGTTCGC ACCTGTGCAC TGCACAGCTT GAAACAGATC TAGAAAGAGA
  AATGTCGTGT CTGGGACACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61079236	NES16586930	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47942154					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079236	NES16586930	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293942 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	943 bp upstream
Cpgi13791	CpG island 13791	884 bp distal
Gm64355	predicted gene, 64355	1959 bp downstream
Rr584800	regulatory region 584800	802 bp distal
Tssr35576	transcription start site region 35576	1255 bp upstream
Tssr35577	transcription start site region 35577	1222 bp upstream
Tssr35578	transcription start site region 35578	1200 bp upstream
Tssr35579	transcription start site region 35579	1156 bp upstream