rs47942799 SNP Detail

Summary

• ID
  rs47942799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148529189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC CCGCAACCCC TATCGGGCGG
  R
  CGGCGCCGCC ATCTTGTGCG TCGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss148007725	ENSMUSSNP2623831	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss321420472	CHEV_4_147818841	CHEVERUD	SCREENING_POP	f	SNP			G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs47942799					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148529189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	within coordinates
Gm23303	predicted gene, 23303	1247 bp upstream
Rr604684	regulatory region 604684	3 bp proximal
Rr604685	regulatory region 604685	29 bp proximal
Tssr44605	transcription start site region 44605	233 bp upstream
Tssr44606	transcription start site region 44606	1 bp downstream
Tssr44607	transcription start site region 44607	12 bp downstream
Ubiad1	UbiA prenyltransferase domain containing 1	within coordinates