rs47944688 SNP Detail

Summary

• ID
  rs47944688
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:40519406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCGGTTAT TTCAACTCTG
  GTTTGCTGCA ATCGTCGCCC TTTTTATGCT GAAATCTAAC AGGACAATCC GCTCCCGCAG
  AGCTTAGTAT GATTGTTGTC CTTGTTGTTG TCCTGGCGGT TGGCCTACCA CTCTTGGGAG
  CATGTCTTGG TAACCCGGGA TGAAGTTCTC AGAGCTGGTG GAGGCCACCG GGCTAGGGAG
  R
  TAACTTCCCC AGTGCGGTGG AAAATCAGTG TCTGGGGACC CAGTCCTGGG CGGTACCAAA
  CGCTTTGCCA AACCCGAAGT GAAACAAAAA GTAGGTGTAA AAGTTCGCGC CTCTGTTGGA
  GACAGCCGCG CACCCCCTCC CTGCCTGCCG CGCACCCCCT CCCTGCCTGC CGCGGTATTG
  GGCTGCACCC GGGGACTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147693565	ENSMUSSNP6759455	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47944688					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:40519406 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7065	CpG island 7065	within coordinates
Gm63080	predicted gene, 63080	within coordinates
Rr406269	regulatory region 406269	1856 bp proximal
Rr501588	regulatory region 501588	965 bp distal
Rr501589	regulatory region 501589	402 bp distal
Rr501590	regulatory region 501590	within coordinates
Rr501591	regulatory region 501591	1481 bp proximal
Tssr4586	transcription start site region 4586	708 bp downstream
Tssr131170	transcription start site region 131170	1119 bp downstream
Tssr131171	transcription start site region 131171	1089 bp downstream
Tssr131172	transcription start site region 131172	1006 bp downstream
Tssr131173	transcription start site region 131173	956 bp downstream
Tssr131174	transcription start site region 131174	928 bp downstream
Tssr131175	transcription start site region 131175	785 bp downstream
Tssr131176	transcription start site region 131176	744 bp downstream
Tssr131177	transcription start site region 131177	689 bp downstream
Tssr131178	transcription start site region 131178	653 bp downstream
Zfpm2	zinc finger protein, multitype 2	within coordinates