rs47944788 SNP Detail

Summary

• ID
  rs47944788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45863365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTATAGG CACTTTGGTT
  GAGGCTGTCG GTGGCTCAAT GCTGACCTCA TATGGTCAAT GCAGGGATTG CCACACACCT
  GTTAGGGCTC AGGCCCATAC ACCCAGTCGG GTTGAAATAG TTATCCTTAA ATGTGGCTTC
  TTTGTGAATT AGAAAAGTGG TCCCTTGCAC TCCTGTAAGT CGGGTTCCCC CATCGATGAT
  R
  TTTAGACCTT GGTAAGAGTT TCAATGAAGA AAACTTATAA GACATAGGAT TAGGTCAAAA
  AAAGCAAGTT CTGTTTTTCT AACTATGGGT TCTTGGGCAA GCCAGCTAAC TTCTCTGGGC
  CTCGGGCAGG TTTGGTTTTT TTTTGTTTTG TTTTGTTTTT TTGTTTTTTT GGTTTTTTTT
  TTAACCCGTA GTTTATACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259852	NES15755810	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47944788					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259852	NES15755810	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45863365 () rs orientation: forward

Symbol	Name	Function Class
Rr405301	regulatory region 405301	8 bp downstream
Rr527425	regulatory region 527425	within coordinates
Rr527426	regulatory region 527426	230 bp proximal
Rr527427	regulatory region 527427	1939 bp proximal