rs47945743 SNP Detail

Summary

• ID
  rs47945743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:49658714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTGGCTG TTTCGAGAAA
  GGATTCAAGG GATACAAGGG TCCTTATGTA GGAGTCTGAC AGGACAATAT GGAAGGCATT
  AAAGGAAACC CAGACAAGAA CTTAGCCAAA CTTGACCTTT AGAGTACTAA TCTTATAGCT
  GTTGTGAGGT CAAAAGGAAA GTAGTGTGTC TGTAGGGACC AGGACAGAGG GACCTGAGGT
  R
  GGCACTGCTG GTGGCCTGGA GACTACCACC CAGAACTCAG AAGGCGACGC GGTGGCACCA
  GGAAGACCTT GCTTCAGTAG TCTGGGTTAT GCACTTCTCC TGGTCAAAAA TGCGGAACGG
  TTCCTCCGTG GCAGATTGTA TCGCCACGAT AAGCAAAGGC AACTGGTAAT TCTTATAAAT
  GGGGATTGAA CTGTAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146526533	ENSMUSSNP3638497	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47945743					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:49658714 () rs orientation: forward

Symbol	Name	Function Class
Kif5c	kinesin family member 5C	Intron
Rr556668	regulatory region 556668	346 bp proximal
Rr556669	regulatory region 556669	1846 bp proximal