rs47945759 SNP Detail

Summary

• ID
  rs47945759
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115626943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATTCCT GTATGAGCCA
  GCAACTCCAC TACTAGTATA TACCCCAAAC AATTGAAGAC AGGGGCTGGG CTGGTGAGAC
  AGATTGTGGG TAAACCTCCC CTGAATTCAA TCCCTGGGAC CCAGGTGGTG GAAGGAGAGA
  ACTGTCTCCC ACAAGTGGTC CTCTGACCTC CACACACTTA CACACACAGT GTTTTCAGAT
  G
  TGTAAAGTCT CTAGCGTGAG AGCGTTTGTC ACCGGCTGGT CCTGAAAGTG GGCCAGGGAG
  CTCAGAGTTT AATGCCGACC GAGCTCTATT TTGGGAAGAT CAGGTTCTTA CAATGAATGT
  GACTGTCGTC AACGACGCTG ACATCATCCT TAAGATAGTT AACACTACCT TTGATGCTAT
  TCTAGACTTT ATATGCGTAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss149125716	ENSMUSSNP663702	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47945759					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115626943 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16375	CpG island 16375	937 bp proximal
Gm24265	predicted gene, 24265	575 bp upstream
Gm24407	predicted gene, 24407	1370 bp upstream
Gm57305	predicted gene, 57305	749 bp downstream
Rr1425	regulatory region 1425	within coordinates
Rr108333	regulatory region 108333	543 bp distal
Rr124163	regulatory region 124163	within coordinates
Tssr48292	transcription start site region 48292	426 bp upstream
Tssr48293	transcription start site region 48293	572 bp upstream
Tssr48294	transcription start site region 48294	647 bp upstream
Tssr48295	transcription start site region 48295	1347 bp upstream
Tssr48296	transcription start site region 48296	1442 bp upstream
Tssr52808	transcription start site region 52808	38 bp downstream
Tssr52809	transcription start site region 52809	60 bp downstream
Tssr52810	transcription start site region 52810	669 bp downstream
Tssr52811	transcription start site region 52811	946 bp downstream
Tssr52812	transcription start site region 52812	1059 bp downstream
Tssr52813	transcription start site region 52813	1071 bp downstream
Tssr52814	transcription start site region 52814	1107 bp downstream
Tssr52815	transcription start site region 52815	1301 bp downstream
Tssr52816	transcription start site region 52816	1460 bp downstream