rs47946784 SNP Detail

Summary

• ID
  rs47946784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41443214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTTCTGG GAGCCTAATT GTTCTCCAAG TTATGACGAT
  CTTTCCCAGA AAGTGAAGAC TGGCTGACAG CGCCGAGCTG GTTCTGACTG CAGTGTGGGC
  Y
  TGCACCTTGT AGTTATCCTG TCCCTCATCC TTCAGCAAGT GCAGGCCACT GGGTCCTTTA
  CTTAATAAAC AAGAGGATGG GGGGAGTTGG ACATGTGGAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61386542	NES16765689	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs47946784					SNP	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386542	NES16765689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41443214 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	within coordinates
Mir100	microRNA 100	414 bp downstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677056	regulatory region 677056	437 bp proximal
Rr677057	regulatory region 677057	938 bp proximal
Tssr84510	transcription start site region 84510	419 bp downstream
Tssr84511	transcription start site region 84511	80 bp upstream