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rs47947075 SNP Detail
Summary
  • ID
    rs47947075
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr10:117841224 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCCTCTGCA GCTTCCGGCT
    CCGTGTGGCA CCTGGGTCCT GGACCGGAAG GCTGCAAATC AGTGGTCAGG AGCTCTTCGG
    GCTGGTCCAT GTATCCTGTC AGTCACAAGG CCTGGAGACC TATTCTTAGA CTCTCAGTTC
    TTATAGACCT TATTAAAATG GTAATATCCT TGCTGGCATC AATCACTGAC AAATTATGCA
    Y
    GGGAAACTTG GGCTCCGGTT TGCAGAACAA GCTTTTCTGG AGGGGATGGT TCACAGGGAA
    GTGCTGGGAA GTGGTAGCCA TTCCTCAGGG AGTGAAAGGA ATATGTAGAG TTTGAGGGGT
    GAGCAGGGCA GCCATTCCAA AAGGCTCCAG GAGAGGAAGC TGATGGGACC ACGCTTTGTC
    TCTGTTGCCT GCTCCTCTGC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss52224730 NES15323645 PERLEGEN MM_PANEL2 f SNP C C C C C C T C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs47947075 SNP C C C C C C T C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss52224730 NES15323645 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr10:117841224 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm37852 predicted gene, 37852 32 bp downstream
Rr226004 regulatory region 226004 within coordinates
Rr385361 regulatory region 385361 92 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory