rs47947377 SNP Detail

Summary

• ID
  rs47947377
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:88277280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGAATTATCC ACTGTTAAGG CCCAGGTAAC TGCTACCTGT
  CTAGCCTGCT ATTTCATGCT GTTACTAATG TCAGAAGGAA GCTTTCTCAT ATGCTGTTAT
  K
  GCTGCTACTA GGATGTTTTG GCCCTTAGTA GTTTTTGGAA ACCAGTCACA ACAGAGGTCA
  GTTAGAGCTG CTTTGTACAT TTAGCCACAA AAAGCTTGGA C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60289482	NES15800000	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G		T	T	T	T
ss146186858	ENSMUSSNP4552447	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47947377					SNP	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60289482	NES15800000	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:88277280 () rs orientation: forward

Symbol	Name	Function Class
Gm50041	predicted gene, 50041	632 bp upstream
Rr333904	regulatory region 333904	880 bp distal
Rr343663	regulatory region 343663	281 bp distal