rs47948278 SNP Detail

Summary

• ID
  rs47948278
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48408536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCAATCA CTGTCACTTG
  ACATTTGTTT TCTGCTCACT GTGATCACTT GGTATCTTTT GTTTTTATCA ATCTTAGAAT
  GATTTTATAC TGAAATGCCC TTGCTGTGTT GCCCAGGTTG CTCTAGAACT GGAAATCCTG
  CGTAAGGGTC CCCAGTGATA GGTGTGTACC CAACAGCAGG TGAACTTCAT ACATCAAGAG
  S
  CAGAAGTGCA TTCTGGATGG AGAAGCTAAT AGGTAACAGC CACACTAGAC CTTATTAGGG
  AGAGTAATGC CACTCTTTAT TAAGCGGTAA AGATGGCTTC CCATGTTAAC TGTGTTCTGG
  TTCTCTTAAG TGGCTGATCA TTCCTATGCT ATTTTCCCTT AACCATGTAT TCCCCTAAGT
  GGTATTGGGA GGAAGTTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61394044	NES16775882	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47948278					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394044	NES16775882	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48408536 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	879 bp upstream
Cpgi21716	CpG island 21716	1216 bp distal
Gm5617	predicted gene 5617	1264 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	1937 bp upstream
Rr195326	regulatory region 195326	336 bp distal
Rr206379	regulatory region 206379	735 bp distal
Rr401354	regulatory region 401354	1718 bp downstream
Tssr2862	transcription start site region 2862	1338 bp upstream
Tssr84991	transcription start site region 84991	1970 bp downstream
Tssr84992	transcription start site region 84992	1836 bp downstream
Tssr84993	transcription start site region 84993	1785 bp downstream
Tssr84994	transcription start site region 84994	1326 bp downstream
Tssr89394	transcription start site region 89394	1963 bp upstream
Tssr89395	transcription start site region 89395	1918 bp upstream
Tssr89396	transcription start site region 89396	1901 bp upstream