rs47948912 SNP Detail

Summary

• ID
  rs47948912
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115566849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCTAAA CCTGGTGGAG
  AGTCAGCCCA GGTTCTTCCA AATCAAATGG AAGGGAGCTA GGACCCCAGA TGAAAGGGAG
  TCACTTGGAG GGTGCACAGC CTGGAATCTC CGAGACACCG ACTTCTCTCT CCACTTCATT
  GGGGACCCTG CCAGCGGGCA AGTGTTTGGA ATCAGTTTCC CCCCACTCCA GACAGTCCGA
  G
  AGGGGCTGGA AGTGAGACAG GAGGAGGTGC CCACAGAAGG CCGGGGAGGT GACAACTTGG
  GAAACCTGGC TCGAGGCTGG GCATTCTCTC AGCTGACCAT AGGGGTCCCA GGTGTGGAGA
  AAAGGGGTTT AGGGGAGTTA CAAGGCACAC TTAATTTGGA CAGCAAGGGC CGAGGAGGGG
  CAAACAAAAC TGGGAAAGAT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss149124632	ENSMUSSNP3235846	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs47948912					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115566849 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	230 bp proximal
Gm43231	predicted gene 43231	within coordinates
Msi1	musashi RNA-binding protein 1	885 bp upstream
Rr618242	regulatory region 618242	within coordinates
Rr618243	regulatory region 618243	704 bp proximal
Tssr48228	transcription start site region 48228	715 bp upstream
Tssr48229	transcription start site region 48229	732 bp upstream
Tssr48230	transcription start site region 48230	759 bp upstream
Tssr48231	transcription start site region 48231	795 bp upstream
Tssr48232	transcription start site region 48232	832 bp upstream
Tssr48233	transcription start site region 48233	906 bp upstream
Tssr48234	transcription start site region 48234	930 bp upstream
Tssr48235	transcription start site region 48235	969 bp upstream
Tssr48236	transcription start site region 48236	1154 bp upstream
Tssr48237	transcription start site region 48237	1527 bp upstream
Tssr48238	transcription start site region 48238	1790 bp upstream
Tssr52797	transcription start site region 52797	705 bp downstream