rs47949188 SNP Detail

Summary

• ID
  rs47949188
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:29352042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGCGAT GAGATGCCGT
  GAGGACTAAA CATGTCAAAC ATTTCAGTTC CCCTATCTGT ATTAAACAGG AGCATCGATA
  GTTTCTGGGA TTGCTGTAAA GATGAAGTGA ACTAATTGCC ACTAAGAGTT TAAAATAGCT
  CCTGCATCTA ATGAGCAAGT CATTTGTAGA TAACAATTTC TATCTGTAGC TACCCTGTGG
  Y
  CACTATTTCG TTTACAAAGA GACAGTTACT TGTGGGCTGG AGGCCCCTTC CATTCTGTCA
  TCAAGATGAG GATAGTAGGT CATTTCATGC ACAGAAAAGA CATACTGCTT TGCTTTGCTG
  GTGAGGCGAC CTTGAGAATA TCCTAACCAA GAACCTGTGA TAAGAGCTGG AGACATAGGC
  CCCTTTGGGA CAGTAGCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss136239109	ENSMUSSNP3127385	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs47949188					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:29352042 () rs orientation: forward

Symbol	Name	Function Class
Gm68891	predicted gene, 68891	within coordinates
Ntm	neurotrimin	within coordinates
Tssr84200	transcription start site region 84200	1626 bp upstream
Tssr84201	transcription start site region 84201	1651 bp upstream