rs47949259 SNP Detail

Summary

• ID
  rs47949259
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:52651166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGTTGA GAATTTGCTC
  AGGTGAACCA AATGTAACTG ATGGAATTTG CCATTGTGAT GGATAAAGTT GATTGTATAC
  CTAACCAAAC CAATAATCTC AAGGAGACAA GACTCTCAAG ATGCTTTCTG GGGTATTGAA
  TTGGTTATGA AAATTAATGT GAGGTGATCA GTCTTAAATG TGTGTAGAAG CCAGGCTGTG
  W
  ATGTGAGTAA ATGGCTCACC AGCATGTAGG GATTTACAGT TCTCTTCTTT GGACTCTAGA
  TACACTGGGA AACGTTGCTT CAAGCATCTA ATACTTTTAC TTGCAAAGAT GGAGACTGTG
  TGTTGAAGGA TAAGTGAAAA TACATCTATA TCCCTTAAAA TGATTTTGTC AGTTTTTTTT
  TTTATCATAG CAACAGAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss144869185	ENSMUSSNP5857308	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47949259					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:52651166 () rs orientation: forward

Symbol	Name	Function Class
Gm9892	predicted gene 9892	1075 bp upstream
Gm64848	predicted gene, 64848	within coordinates
Rr663484	regulatory region 663484	914 bp distal
Tssr81291	transcription start site region 81291	1233 bp upstream
Tssr81292	transcription start site region 81292	1060 bp upstream
Tssr81293	transcription start site region 81293	987 bp upstream
Tssr81294	transcription start site region 81294	940 bp upstream