rs47949546 SNP Detail

Summary

• ID
  rs47949546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20414341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCGCTGGAG CTCCAGGGCT CTGGGCAGGA GGACACAAGG
  CACCACCGCA CACTCTCCAT GAAGCCTGGG TGGGCATCTG GCTGTGCGAA GCCAAGGATC
  Y
  CCAGTCTGCA GGGCGTGAAG AGGGAGCAGT CCCGGGTCCG TGGGTTTCAC AGAAACCAGG
  GACAACAGAT TCTAGTTCTT GGGCATCACA GAATGTTAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146173137	ENSMUSSNP5539232	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325739993	CHEV_19_20511467	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47949546					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20414341 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	888 bp distal
Gm32689	predicted gene, 32689	1722 bp upstream
Gm41816	predicted gene, 41816	777 bp upstream
Rr356916	regulatory region 356916	1941 bp distal
Rr356917	regulatory region 356917	60 bp proximal
Rr361508	regulatory region 361508	73 bp proximal