rs47949628 SNP Detail

Summary

• ID
  rs47949628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:38796938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTGGGAG CGACCCTGTT
  TGAATGTTAA CTGCCTTGTC CGCCATAAGT GCTTACTTAC AAAGTCTTGG CCTTATGGAA
  AAGTACGAGC TTAGTTGAGA TCTCTGTGGG AAAAGTTGAG GCCTCTGTGG GAAAGTACTA
  CCCCCAGTTA AGAACAAATA GCTATAGATC TTGTGGACAG GTACCTAGCA GCCCATTCTG
  Y
  TCTGTTCCTC CTGCTGAACT TTTTACCTAG CCAATATCCT GCTTTTGGGA ACAGGTGTGT
  TCTCCCAGAA ACAAAGCGAT TTTGTGTCAT CCCCCTCCCC ATACCCTGCT TCTGTGGGCA
  CAAAACCTGC CTGGGAATAG TAAAATTTGA CAGCTTGATC AATCAGACTT GCTGTCCGTC
  CTTGTGTTTC TCGCCCCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63267120	NES17479377	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47949628					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63267120	NES17479377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:38796938 () rs orientation: forward

Symbol	Name	Function Class
Noc3l	NOC3 like DNA replication regulator	within coordinates
Tssr159136	transcription start site region 159136	1473 bp downstream