rs47949844 SNP Detail

Summary

• ID
  rs47949844
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46036338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGTAAGC TGCTCACAAC
  TGCCGGTAAC TTCAGCTGTA GGGGACCTAA CAACCATCTC TGGTCTCCTG GCACCCTGTC
  CCCAAGAGAG AGGGGAGGAC CGATTACCTG GGTGTCAGTA GGGCAGGCCC CTTTGAAGAC
  TGTCTCGAAG TTGTCCCAGT AAGCCAGCCT CAGGGAGCTG CCACAGCTGA GGTACCACCA
  K
  TAGCTGGACC CTTGTGGGAG AGCCCTTCCA TGACATCATC AGTCAGACTC TAGGCATCAA
  AACTATCAAG TCAGGCTGTT GAACAGGATT AGAGCACTGA GTGCCGAAAC TTCTAGGCAT
  CTCTGCTCTT CCCAAGCAGA GTGACTTTGT GGAAGCTGTG TATCTTCTCT GCTTTGAGGA
  GATCATCTGC TGAATTCGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60259597	NES15753052	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47949844					SNP	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259597	NES15753052	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46036338 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9206	CpG island 9206	972 bp distal
Gm35456	predicted gene, 35456	within coordinates
Rr331486	regulatory region 331486	538 bp distal
Rr331487	regulatory region 331487	1463 bp proximal
Rr339880	regulatory region 339880	737 bp distal
Rr339881	regulatory region 339881	662 bp proximal