rs47952659 SNP Detail

Summary

• ID
  rs47952659
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43924375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGC TATGTTCTGA TTTGCCACCA
  M
  TTAGTGGTGG TCACTCACTC ACACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145670923	ENSMUSSNP522348	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss325395839	CHEV_17_43750433	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47952659					SNP	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43924375 () rs orientation: forward

Symbol	Name	Function Class
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	1282 bp downstream
Rr527133	regulatory region 527133	1455 bp distal
Rr527134	regulatory region 527134	1684 bp distal
Tdrd6	tudor domain containing 6	1851 bp downstream
Tssr144715	transcription start site region 144715	1534 bp downstream
Tssr148139	transcription start site region 148139	1428 bp upstream
Tssr148140	transcription start site region 148140	1378 bp upstream
Tssr148141	transcription start site region 148141	1327 bp upstream
Tssr148142	transcription start site region 148142	1281 bp upstream