rs47953336 SNP Detail

Summary

• ID
  rs47953336
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:9229911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCTTCAGG TGTGCAGTGG
  CGTTTCCTTC CTCCCTTCCT TCCAGCCTCC TCTGTGACAC CAAGGGATGG GAGATATGGA
  GCTTTGCCTA GGCAGGTTTT TGCTCTCTCT TCTCTGAGTT TGACAGGTTC TCTTCTAATT
  ACCTGTTCTT CACATGCCCA GCCAATCAGG GTGTGGCTGA GAATATACAC ATTCTAGTTT
  S
  CACAGTCTGG CGTATGAGAC TCAGTGCTCC AACTGTAAGC TGGGGCTTCC TCCTGCCGCA
  CCCCATGTTT GTAGGCAGGG TACTCACTCC TGTTTGGGGA CTGATGCACC TTTCCTGCTC
  ATCTCCCCAC CCTCCCTGGA AGATTCGCTG CAGCTGAGAC CAGCTCTTCA CAGATGCTCT
  CTGTCGGTAC TCCAGCCTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ
ss60528498	NES16547962	PERLEGEN	MM_PANEL2	f	SNP	C	C	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ
rs47953336					SNP	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60528498	NES16547962	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:9229911 () rs orientation: forward

Symbol	Name	Function Class
D17Mit225	DNA Segment, Chr 17, Massachusetts Institute of Technology 225	463 bp distal
Rr521842	regulatory region 521842	1193 bp distal