rs47953473 SNP Detail

Summary

• ID
  rs47953473
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:143607938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAACTCTG ATTCTCTTCA
  AGAGCAGCGA GTGCTCTTAA CAACAGAACT ACATCCCCAC ACAATTATTA CTGTGTGTAT
  GTCATGTGTG GACGCCCACG CATGCTGCGG TCACAGTAAA ACTTTATAGT CAGTTCTTTC
  CTTCTGCCTT TAAGTGGGGG CCACTTGAGC CAATCATCAG CCTTCCTTTT CAGATAGTTT
  M
  TCACTCCCTA CTCTATGCAT TTGCGAGTCG CAGCCCTTAG CCATCAGGTT TTGTAGAGCA
  GGGCGTCCTC GTGCTCCTGA TAGACCCGGC TTCCTCTCCA GGATGCTCTA GAGGGGCAGA
  CAGGAGGTTC GAGGGAGAGT GCTGCGCTGC AGGATCCAAG TCTCCTAGCT AAGCAGCTAC
  TGCAGCTACT GCAAGGCCGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60852268	NES15998575	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47953473					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852268	NES15998575	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143607938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16995	CpG island 16995	within coordinates
Cyth3	cytohesin 3	264 bp upstream
Gm73103	predicted gene, 73103	536 bp downstream
Rr124733	regulatory region 124733	within coordinates
Tssr49666	transcription start site region 49666	257 bp upstream
Tssr49667	transcription start site region 49667	283 bp upstream
Tssr49668	transcription start site region 49668	372 bp upstream