rs47953729 SNP Detail

Summary

• ID
  rs47953729
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:7280777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACC CAGGGGCGAC GAGGCACACA
  S
  GGAAGCCGGG ACGGGGCCTC GCGGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss60965534	NES16157328	PERLEGEN	MM_PANEL2	f	SNP	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs47953729					SNP	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60965534	NES16157328	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7280777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi18306	CpG island 18306			within coordinates
Gm45844	predicted gene 45844			Intron
				Noncoding-Transcript-Variant
Rr642334	regulatory region 642334			within coordinates
Rr642335	regulatory region 642335			409 bp proximal
Rr642336	regulatory region 642336			462 bp proximal
Rr642337	regulatory region 642337			723 bp proximal
Tssr64464	transcription start site region 64464			211 bp upstream
Tssr70610	transcription start site region 70610			251 bp downstream
Tssr70611	transcription start site region 70611			292 bp downstream