rs47954322 SNP Detail

Summary

• ID
  rs47954322
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:12197233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCAAACA GCAGAAGTGA
  CAGCCACAGT AAATAATTAC GATGGAAAAA CATTAAAAGT GGGACTGTGT AGTAAAGAAC
  AGATACACAC AAAACAGTGC ATGTATCCAT GGGTCACAGA ACATACCTCC AAGGACAAAG
  GGTGACTACT ACTGTCATTC TTACAAGCAA GGGCTGAAGA AAGAGGTATC TTTGAAAATT
  R
  CATGTGAGGA CTTCAAAGCA CAAACGGGAT CCGAGGCTCT GCAGGCCTTT ACTGAGCACC
  AAACACCGTG TTTGACAATA TACACACAAC AGGCAGACTA GGTTCTAAAG CTGCACTGCA
  GTCTGGCCAC ATCCCATCTT TCCAACAGTG CCCTCTCCTC CCTCATCTCT TAGCATATGG
  CACCACCCCC CCACATCCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61744045	NES17670697	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47954322					SNP	G	G	A	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61744045	NES17670697	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:12197233 () rs orientation: forward

Symbol	Name	Function Class
Gm10336	predicted gene 10336	370 bp downstream
Mtr	5-methyltetrahydrofolate-homocysteine methyltransferase	365 bp downstream